Publications

Scott, A. J., Ellis, S. R., Hofstaedter, C. E., Heeren, R. M. A., & Ernst, R. K. (2023). Spatial lipidomics reveals biased phospholipid remodeling in acute Pseudomonas lung infection. iScience, 26(9), Article 107700. https://doi.org/10.1016/j.isci.2023.107700

Claes, B. S. R., Bowman, A. P., Poad, B. L. J., Heeren, R. M. A., Blanksby, S. J., & Ellis, S. R. (2023). Isomer-Resolved Mass Spectrometry Imaging of Acidic Phospholipids. Journal of the American Society for Mass Spectrometry. Advance online publication. https://doi.org/10.1021/jasms.3c00192

Zhang, Y., van Schayck, J. P., Pedrazo-Tardajos, A., Claes, N., Noteborn, W. E. M., Lu, P-H., Duimel, H., Dunin-Borkowski, R. E., Bals, S., Peters, P. J., & Ravelli, R. B. G. (2023). Charging of Vitreous Samples in Cryogenic Electron Microscopy Mitigated by Graphene. ACS Nano. Advance online publication. https://doi.org/10.1021/acsnano.3c03722

Haartmans, M. J. J., Claes, B. S. R., Eijkel, G. B., Emanuel, K. S., Tuijthof, G. J. M., Heeren, R. M. A., Emans, P. J., & Cillero-Pastor, B. (2023). Matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) reveals potential lipid markers between infrapatellar fat pad biopsies of osteoarthritis and cartilage defect patients. Analytical and Bioanalytical Chemistry. Advance online publication. https://doi.org/10.1007/s00216-023-04871-9

You, W., Zhou, T., Knoops, K., Berendschot, T. T. J. M., van Zandvoort, M. A. M. J., Germeraad, W. T. V., Benedikter, B., Webers, C. A. B., Reutelingsperger, C. P. M., & Gorgels, T. G. M. F. (2023). Stressed neuronal cells can recover from profound membrane blebbing, nuclear condensation and mitochondrial fragmentation, but not from cytochrome c release. Scientific Reports, 13(1), Article 11045. https://doi.org/10.1038/s41598-023-38210-w

Mathew, A., Giskes, F., Lekkas, A., Greisch, J-F., Eijkel, G. B., Anthony, I. G. M., Fort, K., Heck, A. J. R., Papanastasiou, D., Makarov, A. A., Ellis, S. R., & Heeren, R. M. A. (2023). An Orbitrap/Time-of-Flight Mass Spectrometer for Photofragment Ion Imaging and High-Resolution Mass Analysis of Native Macromolecular Assemblies. Journal of the American Society for Mass Spectrometry, 34(7), 1359-1371. https://doi.org/10.1021/jasms.3c00053

Van der Stede, T., Spaas, J., de Jager, S., De Brandt, J., Hansen, C., Stautemas, J., Vercammen, B., De Baere, S., Croubels, S., Van Assche, C-H., Pastor, B. C., Vandenbosch, M., Van Thienen, R., Verboven, K., Hansen, D., Bove, T., Lapauw, B., Van Praet, C., Decaestecker, K., ... Derave, W. (2023). Extensive profiling of histidine-containing dipeptides reveals species- and tissue-specific distribution and metabolism in mice, rats, and humans. Acta Physiologica, 239(1). Advance online publication. https://doi.org/10.1111/apha.14020

Hafeez, S., Decarli, M. C., Aldana, A., Ebrahimi, M., Ruiter, F. A. A., Duimel, H., van Blitterswijk, C., Pitet, L. M., Moroni, L., & Baker, M. B. (2023). In Situ Covalent Reinforcement of a Benzene-1,3,5-Tricarboxamide Supramolecular Polymer Enables Biomimetic, Tough, and Fibrous Hydrogels and Bioinks. Advanced Materials. Advance online publication. https://doi.org/10.1002/adma.202301242

van Hoogstraten, S. W. G., Kuik, C., Arts, J. J. C., & Cillero-Pastor, B. (2023). Molecular imaging of bacterial biofilms-a systematic review. Critical Reviews in Microbiology. Advance online publication. https://doi.org/10.1080/1040841X.2023.2223704

Tang, H., Ali, A., Abdelazem, E., Ottenhoff, T. H. M., Heeren, R. M. A., & Mashaghi, A. (2023). Random forest and live single-cell metabolomics reveal metabolic profiles of human macrophages upon polarization. Biotechnology and Bioengineering, 120, 2314-2325. Advance online publication. https://doi.org/10.1002/bit.28494

Hafeez, S., Aldana, A. A., Duimel, H., Ruiter, F. A. A., Decarli, M. C., Lapointe, V., van Blitterswijk, C., Moroni, L., & Baker, M. B. (2023). Molecular Tuning of a Benzene-1,3,5-Tricarboxamide Supramolecular Fibrous Hydrogel Enables Control over Viscoelasticity and Creates Tunable ECM-Mimetic Hydrogels and Bioinks. Advanced Materials, 35(24). Advance online publication. https://doi.org/10.1002/adma.202207053

Dahmen, J., Emanuel, K. S., Fontanellas-Fes, A., Verhagen, E., Kerkhoffs, G. M. M. J., & Pluim, B. M. (2023). Incidence, prevalence and nature of injuries in padel: a systematic review. BJM Open Sport & Exercise Medicine, 9(2), Article e001607. https://doi.org/10.1136/bmjsem-2023-001607

Huizing, L., Chen, L., Roeth, A. A., Heij, L. R., Flinders, B., Bouwense, S. A. W., Balluff, B., Neumann, U. P., Heeren, R. M. A., Damink, S. W. M. O., Vreeken, R. J., & Schaap, F. G. (2023). Tumor ratio of unsaturated to saturated sulfatide species is associated with disease-free survival in intrahepatic cholangiocarcinoma. Cellular oncology, 46(3), 629-642. Advance online publication. https://doi.org/10.1007/s13402-022-00766-6

Hadavi, D., Tosheva, I., Siegel, T. P., Cuypers, E., & Honing, M. (2023). Technological advances for analyzing the content of organ-on-a-chip by mass spectrometry. Frontiers in bioengineering and biotechnology, 11, Article 1197760. https://doi.org/10.3389/fbioe.2023.1197760

Odachowski, M., Neven, R., Perversi, G., Romano, D., Slabber, C. A., Hadiji, M., Honing, M., Munro, O. Q., Zhao, Y. D., & Blom, B. (2023). Ionic mononuclear [Fe] and heterodinuclear [Fe,Ru] bis (diphenylphosphino)alkane complexes: Synthesis, spectroscopy, DFT structures, cytotoxicity, and biomolecular interactions. Journal of Inorganic Biochemistry, 242, Article 112156. https://doi.org/10.1016/j.jinorgbio.2023.112156

Morgner, J., Bornes, L., Hahn, K., Lopez-Iglesias, C., Kroese, L., Pritchard, C. E. J., Vennin, C., Peters, P. J., Huijbers, I., & van Rheenen, J. (2023). A Lamb1Dendra2 mouse model identifies basement-membrane-producing origins and dynamics in PyMT breast tumors. Developmental Cell, 58(7), 535-549.e5. https://doi.org/10.1016/j.devcel.2023.02.017

Krijnen, K., Keelor, J. D., Bohm, S., Ellis, S. R., Koster, C., Hohndorf, J., Heeren, R. M. A., & Anthony, I. G. M. (2023). A Multimodal SIMS/MALDI Mass Spectrometry Imaging Source with Secondary Electron Imaging Capabilities for Use with timsTOF Instruments. Journal of the American Society for Mass Spectrometry, 34(4), 720-727. Advance online publication. https://doi.org/10.1021/jasms.2c00381

Baptista, D., Birgani, Z. T., Widowski, H., Passanha, F., Stylianidis, V., Knoops, K., Gubbins, E., Iriondo, C., Skarp, K. P., Rottier, R. J., Wolfs, T. G., van Blitterswijk, C., LaPointe, V., Habibovic, P., Reynaert, N. L., Giselbrecht, S., & Truckenmuller, R. (2023). Polymer film-based microwell array platform for long-term culture and research of human bronchial organoids. Materials today. Bio, 19, Article 100603. https://doi.org/10.1016/j.mtbio.2023.100603

Berger, C., Premaraj, N., Ravelli, R. B. G., Knoops, K., Lopez-Iglesias, C., & Peters, P. J. (2023). Cryo-electron tomography on focused ion beam lamellae transforms structural cell biology. Nature Methods, 20, 499-511. Advance online publication. https://doi.org/10.1038/s41592-023-01783-5

Lamont, L., Hadavi, D., Bowman, A. P., Flinders, B., Cooper-Shepherd, D., Palmer, M., Jordens, J., Mengerink, Y., Honing, M., Langridge, J., Siegel, T. P., Vreeken, R. J., & Heeren, R. M. A. (2023). High-Resolution Ion Mobility Spectrometry Mass Spectrometry for Isomeric Separation of Prostanoids after Girard's reagent T Derivatization. Rapid Communications in Mass Spectrometry, 37(5), Article e9439. Advance online publication. https://doi.org/10.1002/rcm.9439