Publications

Krijnen, K., Heeren, R. M. A., & Anthony, I. G. M. (2026). mspix: A Data Formatfor High Pixel Count Mass SpectralImages. Journal of the American Society for Mass Spectrometry, 37(9), 2247-2250. https://doi.org/10.1021/jasms.6c00079

Visvikis, T., Vierdag, W.-M., Marconato, L., Birmpili, A., Heeren, R. M. A., & Cuypers, E. (2026). Native, Memory-Bounded Conversion of Mass Spectrometry Imaging Data into the SpatialData Ecosystem. Journal of the American Society for Mass Spectrometry, (10). https://doi.org/10.1021/jasms.6c00169

Cao, B., Abee, H. S., Arts, J. J. C., Cillero-Pastor, B., & Honing, M. (2026). Effect of titanium surface roughness on macrophage-bacteria interactions. Materials & design, 271, Article 117028. Advance online publication. https://doi.org/10.1016/j.matdes.2026.117028

Zhong, Y., George, A. E., Koning, R. I., Liv, N., de Heus, C., Tjokrodirijo, R. T. N., Messchendorp, M., Akkermans, J. J. L., Cabukusta, B., Janssen, G. M. C., van Veelen, P. A., Wijdeven, R. H. M., Neefjes, J., Verweij, F. J., & Berlin, I. (2026). CRISPR activation screen uncovers MARCKSL1 as a gauge for extracellular vesicle secretion. Cell Reports, 45(8), Article 117744. https://doi.org/10.1016/j.celrep.2026.117744

Kuik, C., van Hoogstraten, S. W. G., Mayrginther, L., Arts, J. J. C., Honing, M., & Cillero-Pastor, B. (2026). Spatial distribution and structural discrimination of quorum sensing metabolites in Pseudomonas aeruginosa by MALDI-MSI. Analyst, 151(17), 5014-5023. https://doi.org/10.1039/d6an00245e

Guns, P. J., Szabó, B. R., Cherubin, M., Liu, H., Klein, C., Hlova, B., Biagini, T., Alizadeh, E. A., Costa-Faya, S., Van Assche, C. H., Wesley, C. D., Van Daele, M., Pannucci, P., Van Berlo, B., Krüger, D. N., Savchenko, A. S., De Meyer, G. R. Y., & Valentin, J. P. (2026). The INSPIRE doctoral network in safety pharmacology – Looking back and ahead. Journal of Pharmacological and Toxicological Methods, 140, Article 108433. https://doi.org/10.1016/j.vascn.2026.108433

Meyer-Bender, M., Vöhringer, H., Schniederjohann, C., Koziel, S., Chung, E., Popova, E., Brobeil, A., Griese, N., Kolks, N., Held, L. M., Munir, A., Schoof, E., Roussos, P., Nimo, J., Visvikis, T., Brennsteiner, V., Diedrich, L., Vierdag, W. M., Marconato, L., ... Scverse Community (2026). Spatialproteomics: an interoperable toolbox for analyzing highly multiplexed fluorescence image data. Nature Methods, 23(8), 1564-1573. https://doi.org/10.1038/s41592-026-03155-1

Wang, Y., Li, Z., Zhang, M., & Cillero-Pastor, B. (2026). Oxidation-derived metabolites sustain the antioxidant network of quercetin. Journal of Computer - Aided Molecular Design, 40(1), Article 182. https://doi.org/10.1007/s10822-026-00878-3

Iannone, M., Vereyken, L., Grajchen, E., Deneubourg, C., Gorremans, S., Ver Donck, L., Bretteville, A., Moechars, D., Jahouh, F., & Vreeken, R. J. (2026). Development and validation of a robust UPLC-MS/MS method for the analysis of polyamines in cells, biofluids and tissues. Journal of Pharmaceutical and Biomedical Analysis, 274, Article 117392. https://doi.org/10.1016/j.jpba.2026.117392

Helsen, A., Ribeiro, J. S., Beeren, I. A., Duimel, H., Cardinaels, R., Moroni, L., Pitet, L. M., & Baker, M. B. (2026). Linker MolarMass-Driven Control over SupramolecularNetwork Relaxation and Architecture in BTA Hydrogels. Macromolecules, 59(14), 8375–8387. https://doi.org/10.1021/acs.macromol.5c03492

Mathew, A., Veloso, L. M. G. D. S., Giskes, F., Eijkel, G. B., Papanastasiou, D., Heck, A. J. R., Makarov, A. A., Ellis, S. R., & Heeren, R. M. A. (2026). Single-Ion Imaging Native Mass Spectrometry: Unraveling the Structural Features and Dissociation Energetics of Macromolecular Assemblies. Journal of the American Society for Mass Spectrometry, 37(7), 1641-1657. Article 37. https://doi.org/10.1021/jasms.6c00132

Flinders, B., van der Hulst, R., Heeren, R. M. A., & Cuypers, E. (2026). Spatiotemporal Mapping of Drug Incorporation in Human Nails by MALDI-FTICR-MSI. Journal of the American Society for Mass Spectrometry, 37(7), 1676-1682. Article 37. https://doi.org/10.1021/jasms.6c00151

Li, A., Lal, S., Shami, G. J., Campbell, K. S., Wisse, E., & Braet, F. (2026). Cellular accumulation of lipofuscin in the heart: implications in health and disease. Histochemistry and Cell Biology, 164(1), Article 51. https://doi.org/10.1007/s00418-026-02501-w

Braet, F., Wisse, E., Koek, G. H., Shami, G. J., & Li, A. (2026). From lipofuscin accumulation to cellular dysfunction: a focus on liver pathophysiology. Histochemistry and Cell Biology, 164(1), Article 52. https://doi.org/10.1007/s00418-026-02502-9

Han, P., Thomassen, N., & Honing, M. (2026). A Combined MS/MS and IMS Study Into the Fragmentation Pathway of Nifedipine. Journal of Mass Spectrometry, 61(7), Article e70071. https://doi.org/10.1002/jms.70071

Hakke, S. S., Noteborn, W. E. M., Cabukusta, B., Gao, Y., Knoops, K., Lopez-Iglesias, C., Kilgour, D. P. A., Clarke, D. J., Mathew, A., & Heeren, R. M. A. (2026). Isotope Decluttering Reduces Spectral Complexity while Maintaining Protein Structure. Analytical Chemistry, 98(22), 16063-16072. https://doi.org/10.1021/acs.analchem.5c08046

Cao, B., Hadavi, D., Cillero-Pastor, B., & Honing, M. (2026). Application of surface plasmon resonance to elucidate the cooperative DNA binding mechanisms of NFATc1 and c-Jun. Biochimica et Biophysica Acta-general Subjects, 1870(6), Article 130924. https://doi.org/10.1016/j.bbagen.2026.130924

Koutrouli, M., Finotello, F., Schoof, E. M., Roussos, P., Theis, F. J., Marioni, J. C., Huber, W., Saka, S. K., Coscia, F., Mann, M., Cuypers, E., Puelles, V. G., Petrosius, V., Gaifas, L., Heeren, R. M. A., Hoffman, G. E., FNU, P., Rose, C. M., Leote, C., ... scverse Proteomics Consortium (2026). Unpaired data as a first-order challenge in single-cell and spatial proteomics. Nature Biotechnology, 44(6), 891-892. https://doi.org/10.1038/s41587-026-03074-8