Publications

van der Vloet, L., Ducarne, Z., Heeren, R. M. A., Berends, A. C., & Vandenbosch, M. (2024). Lipid analysis of human primary dermal fibroblasts and epidermal keratinocytes after near-infrared exposure using mass spectrometry imaging. Journal of Biotechnology, 396, 53-61. https://doi.org/10.1016/j.jbiotec.2024.10.009

Menendez-Pedriza, A., Gual, M., Molina-Millan, L., Heeren, R. M. A., Barata, C., & Navarro-Martin, L. (2024). Facilitating microplastic ingestion in aquatic models: A verified protocol for daphnia magna as a trojan horse vector. MethodsX, 13, Article 102973. https://doi.org/10.1016/j.mex.2024.102973

Bouvier, C., Van Nuffel, S., & Brunelle, A. (2024). Tof-SIMS spectra of historical inorganic pigments: Copper-, zinc-, arsenic-, and phosphorus-containing pigments in positive polarity. Surface Science Spectra, 31(2), Article 025001. https://doi.org/10.1116/6.0003722

Bouvier, C., Van Nuffel, S., & Brunelle, A. (2024). Tof-SIMS spectra of historical inorganic pigments: Copper-, zinc-, arsenic-, and phosphorus-containing pigments in negative polarity. Surface Science Spectra, 31(2), Article 025002. https://doi.org/10.1116/6.0003723

de Geus, T. J., Franken, G., Flinders, B., Cuypers, E., & Joosten, E. A. J. (2024). The Effect of Spinal Cord Stimulation on Spinal Dorsal Horn Lipid Expression in Experimental Painful Diabetic Polyneuropathy: A Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry Imaging Study. Neuromodulation, 27(8), 1360-1371. https://doi.org/10.1016/j.neurom.2024.09.005

Shami, G. J., Chen, Z., Cheng, D., Wisse, E., & Braet, F. (2024). On the long-term storage of tissue for fluorescence and electron microscopy: lessons learned from rat liver samples. Histochemistry and Cell Biology, 163(1), Article 12. https://doi.org/10.1007/s00418-024-02334-5

Sandström, E., Huysmans, P., Giskes, F., Laeven, P., Van Nuffel, S., Heeren, R. M. A., & Anthony, I. G. M. (2024). Improvements in Fast Mass Microscopy for Large-Area Samples. Analytical Chemistry, 96(45), 18037-18042. https://doi.org/10.1021/acs.analchem.4c03480

Kaufmann, M., Vaysse, P.-M., Savage, A., Kooreman, L. F. S., Janssen, N., Varma, S., Ren, K. Y. M., Merchant, S., Engel, C. J., Damink, S. W. M. O., Smidt, M. L., Shousha, S., Chauhan, H., Karali, E., Kazanc, E., Poulogiannis, G., Fichtinger, G., Tauber, B., Leff, D. R., ... Balog, J. (2024). Testing of rapid evaporative mass spectrometry for histological tissue classification and molecular diagnostics in a multi-site study. British Journal of Cancer, 131(8), 1298-1308. https://doi.org/10.1038/s41416-024-02739-y

Güngör, E., Bartels, B., Bolchi, G., Heeren, R. M. A., Ellis, S. R., & Schluepmann, H. (2024). Biosynthesis and differential spatial distribution of the 3-deoxyanthocyanidins apigenidin and luteolinidin at the interface of a plant-cyanobacteria symbiosis exposed to cold. Plant, Cell & Environment, 47(11), 4151-4170. https://doi.org/10.1111/pce.15010

Krijnen, K., Blenkinsopp, P., Heeren, R. M. A., & Anthony, I. G. M. (2024). Processing Next-Generation Mass Spectrometry Imaging Data: Principal Component Analysis at Scale. Journal of the American Society for Mass Spectrometry. Advance online publication. https://doi.org/10.1021/jasms.4c00314

Shamraeva, M. A., Visvikis, T., Zoidis, S., Anthony, I. G. M., & Van Nuffel, S. (2024). The Application of a Random Forest Classifier to ToF-SIMS Imaging Data. Journal of the American Society for Mass Spectrometry. Advance online publication. https://doi.org/10.1021/jasms.4c00324

Grgic, A., Cuypers, E., Dubois, L. J., Ellis, S. R., & Heeren, R. M. A. (2024). MALDI MSI Protocol for Spatial Bottom-Up Proteomics at Single-Cell Resolution. Journal of Proteome Research. Advance online publication. https://doi.org/10.1021/acs.jproteome.4c00528

Huang, L., Bernink, J. H., Giladi, A., Krueger, D., van Son, G. J. F., Geurts, M. H., Busslinger, G., Lin, L., Begthel, H., Zandvliet, M., Buskens, C. J., Bemelman, W. A., López-Iglesias, C., Peters, P. J., & Clevers, H. (2024). Tuft cells act as regenerative stem cells in the human intestine. Nature, 634(8035), 929-935. https://doi.org/10.1038/s41586-024-07952-6

Henderikx, R. J. M., Schotman, M. J. G., Shahzad, S., Fromm, S. A., Mann, D., Hennies, J., Heidler, T. V., Ashtiani, D., Hagen, W. J. H., Jeurissen, R. J. M., Mattei, S., Peters, P. J., Sachse, C., & Beulen, B. W. A. M. M. (2024). Ice thickness control and measurement in the VitroJet for time-efficient single particle structure determination. Journal of Structural Biology, 216(4), 13. Article 108139. https://doi.org/10.1016/j.jsb.2024.108139

Beumer, J., Geurts, M. H., Geurts, V., Andersson-Rolf, A., Akkerman, N., Völlmy, F., Krueger, D., Busslinger, G. A., Martínez-Silgado, A., Boot, C., Yousef Yengej, F. A., Puschhof, J., Van de Wetering, W. J., Knoops, K., López-Iglesias, C., Peters, P. J., Vivié, J. A., Mooijman, D., van Es, J. H., & Clevers, H. (2024). Description and functional validation of human enteroendocrine cell sensors. Science, 386(6719), 341-348. https://doi.org/10.1126/science.adl1460

Zhang, X., van Veen, S., Hadavi, D., Zhao, Y., Mohren, R., Habibovic, P., Honing, M., Albertazzi, L., & van Rijt, S. (2024). DNA Nanoparticle Based 2D Biointerface to Study the Effect of Dynamic RGD Presentation on Stem Cell Adhesion and Migration. Small, 20(37), Article 2311402. https://doi.org/10.1002/smll.202311402

Vandenbosch, M., van Hove, E. R. A., Mohren, R., Vermeulen, I., Dijkman, H., Heeren, R. M. A., Leonards, P. E. G., & Hughes, S. (2024). Combined matrix-assisted laser desorption/ionisation-mass spectrometry imaging with liquid chromatography-tandem mass spectrometry for observing spatial distribution of lipids in whole Caenorhabditis elegans. Rapid Communications in Mass Spectrometry, 38(17), Article e9850. https://doi.org/10.1002/rcm.9850

Vats, M., Cillero-Pastor, B., Cuypers, E., & Heeren, R. M. A. (2024). Mass spectrometry imaging in plants, microbes, and food: a review. The Analyst, 149(18), 4553-4582. https://doi.org/10.1039/d4an00644e

Tzfadia, O., Gijsbers, A., Vujkovic, A., Snobre, J., Vargas, R., Dewaele, K., Meehan, C. J., Farhat, M., Hakke, S., Peters, P. J., de Jong, B. C., Siroy, A., & Ravelli, R. B. G. (2024). Single nucleotide variation catalog from clinical isolates mapped on tertiary and quaternary structures of ESX-1-related proteins reveals critical regions as putative Mtb therapeutic targets. Microbiology spectrum, 12(8), Article e0381623. https://doi.org/10.1128/spectrum.03816-23

Gao, Y., Zhang, Y., Hakke, S., Mohren, R., Sijbers, L. J. P. M., Peters, P. J., & Ravelli, R. B. G. (2024). Cryo-EM structure of cytochrome bo<inf>3</inf> quinol oxidase assembled in peptidiscs reveals an “open” conformation for potential ubiquinone-8 release. Biochimica et Biophysica Acta-bioenergetics, 1865(3), Article 149045. https://doi.org/10.1016/j.bbabio.2024.149045