Workshop on COVID-19 pathways and omics data analysis with WikiPathways and Cytoscape
In this 3-day workshop, you will learn about molecular pathway curation, pathway and network analysis, and how to automate such an analysis in R to increase reproducibility. We would like to bring together researchers in the COVID-19 field to learn together, exchange ideas and discuss results. The course is a continuous program and builds on each other but it is possible to join only on specific days if needed.
Where: Maastricht, the Netherlands (hybrid setup but limited seats onsite and online).
Location: MECC Maastricht, Forum 100, 6229 GV Maastricht.
Description: The workshop focuses on pathway-based analysis of COVID-19 related omics data.
- Day 1: Pathway curation
- You will learn how to design and curate biological pathways for the online pathway repository, WikiPathways.
- Day 2: Pathway and network analysis
- The hands-on practicals will give instruction on how to conduct pathway enrichment analysis, analyze protein-protein interaction, and data visualization using COVID-19 pathways as pathway models. You will learn to do it manually using tools such as g:Profiler and Cytoscape.
- Day 3: Automated pathway and network analysis with R
- You will learn to conduct the same analysis as day 2 but in an automated manner using R. In the bring-your-own data session, you can apply the obtained knowledge and skills to analyse your own data.
Registration: Please register before June 20, 2022, via this link.
Costs: The workshop is sponsored by the ZonMW COVID-19 grant (#10430012010015) so there will be no registration fee. However, for on-site participants, there is a 50 euros cancellation/no-show fee if you cannot attend without informing us by the latest on 27 June 2022.
Organisation:
- Nhung Pham, PhD (n.pham@maastrichtuniversity.nl)
- Susan Steinbusch-Coort, PhD (susan.coort@maastrichtuniversity.nl)
- Martina Summer-Kutmon, PhD (martina.kutmon@maastrichtuniversity.nl)
Program
Day 1: Pathway curation
Time | Description |
10:00-12:00 | Introduction and basics of pathway curation |
12:00-13:00 | Lunch |
13:00-16:00 | Draw your own pathway |
16:00-17:00 | Discussion: Importance of curation |
17:00-21:00 | Social event & dinner |
Day 2: Pathway and network analysis
Time | Description |
10:00-12:00 | Cytoscape |
12:00-13:00 | Lunch |
13:00-14:30 | Pathway analysis |
14:30-14:45 | Break |
14:45-16:30 | Network analysis |
16:30-17:00 | Q&A |
Day 3: Automated pathway and network analysis in R
Time | Description |
10:00-12:00 | Automated analysis in R |
12:00-13:00 | Lunch |
13:00-16:00 | Bring your own data or practice with our dataset |
16:00-17:00 | Q&A - evaluation - closing |
Also read
-
12 Sep 10 Oct19:30 - 21:30
Human Rights
Studium Generale | Lecture Series
-
15 Sep 17 Dec12:00
TEGL CONFERENCE
The Globalization and Law Network invites you to the TEGL Annual Conference. The conference is aimed at scholars, practitioners, and experts wanting to contribute to an engaging exploration of the intricate relationship between law and uncertainty. In an era marked by unprecedented global challenges...
-
18 Sep 31 Dec11:00 - 15:30
Globalisation & Law Network Seminar Series 2024 - 2025
The Globalisation & Law Network is composed of a group of researchers of Maastricht University, coming from different backgrounds, who study the role that law plays in a globalizing society from a holistic perspective. Invited experts will give a presentation on a specific topic followed by a Q&A...