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Dr S.L.M. Steinbusch - Coort

Key publications
Muñoz García, A., Eijssen, L. M., Kutmon, M., Sarathy, C., Cengo, A., Hewison, M., Evelo, C. T., Lenz, M., & Coort, S. L. (2019). A bioinformatics workflow to decipher transcriptomic data from vitamin D studies. Journal of Steroid Biochemistry and Molecular Biology, 189, 28-35. https://doi.org/10.1016/j.jsbmb.2019.01.003
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Garcia, A. M., Kutmon, M., Eijssen, L., Hewison, M., Evelo, C. T., & Coort, S. L. (2018). Pathway analysis of transcriptomic data shows immunometabolic effects of vitamin D. Journal of Molecular Endocrinology, 60(2), 95-108. https://doi.org/10.1530/JME-17-0186
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Kutmon, M., Riutta, A., Nunes, N., Hanspers, K., Willighagen, E. L., Bohler, A., Melius, J., Waagmeester, A., Sinha, S. R., Miller, R., Coort, S. L., Cirillo, E., Smeets, B., Evelo, C. T., & Pico, A. R. (2016). WikiPathways: capturing the full diversity of pathway knowledge. Nucleic Acids Research, 44(D1), D488-D494. https://doi.org/10.1093/nar/gkv1024
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Kutmon, M., Coort, S. L., de Nooijer, K., Lemmens, C., & Evelo, C. T. (2015). Integrative network-based analysis of mRNA and microRNA expression in 1,25-dihydroxyvitamin D3-treated cancer cells. Genes and nutrition, 10(5), Article 35. https://doi.org/10.1007/s12263-015-0484-0
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Kutmon, M., Evelo, C. T., & Coort, S. L. (2014). A network biology workflow to study transcriptomics data of the diabetic liver. BMC Genomics, 15(1), 971. https://doi.org/10.1186/1471-2164-15-971
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Baccini, M., Bachmaier, E. M., Biggeri, A., Boekschoten, M. V., Bouwman, F. G., Brennan, L., Caesar, R., Cinti, S., Coort, S. L. M., Crosley, K., Daniel, H., Drevon, C. A., Duthie, S. J., Eijssen, L. M. T., Elliott, R. M., van Erk, M., Evelo, C. T. A., Gibney, M., Heim, C., ... Johnson, I. T. (2008). The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and nutrition, 3(3-4), 147-151. https://doi.org/10.1007/s12263-008-0102-5
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Coort, S. L. M. (2005). Regulation of FAT/CD 36-mediated long-chain fatty acid uptake by cardiac muscle : implications for diabetes and its treatment. [Doctoral Thesis, Maastricht University]. s.n.]. https://doi.org/10.26481/dis.20050630sc
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Recent publications
  • Agrawal, A., Balci, H., Hanspers, K., Coort, S. L., Martens, M., Slenter, D. N., Ehrhart, F., Digles, D., Waagmeester, A., Wassink, I., Abbassi-Daloii, T., Lopes, E. N., Iyer, A., Acosta, J. M., Willighagen, L. G., Nishida, K., Riutta, A., Basaric, H., Evelo, C. T., ... Pico, A. R. (2024). WikiPathways 2024: next generation pathway database. Nucleic acids research, 52(D1), D679–D689. https://doi.org/10.1093/nar/gkad960
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  • Grudzien, E., van der Horst, E., van den Bergh, F., Traka, M. H., Ng, D., Hildebrand, F., Evelo, C. T., Coort, S. L. M., Sener, D. D., & Cirillo, E. (2023). Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform. In A. Yamaguchi, A. Splendiani, M. S. Marshall, C. Baker, J. Bolleman, A. Burger, L. J. Castro, O. Eigenbrod, S. Österle, M. Romacker, & A. Waagmeester (Eds.), Semantic Web Applications and Tools for Health Care and Life Sciences (Vol. 3415, pp. 171-172). CEUR Workshop Proceedings. https://ceur-ws.org/Vol-3415/paper-44.pdf
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  • Evelo, C. T. A., & Coort, S. L. M. (2023). Pathway based-analysis of transcriptomic data from vitamin D studies. In Feldman and Pike's Vitamin D: Volume One: Biochemistry, Physiology and Diagnostics (pp. 291-299). Elsevier. https://doi.org/10.1016/B978-0-323-91386-7.00041-6
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  • Lemmens, T. P., Coenen, D. M., Swieringa, F., Niessen, I. C. L., Coort, S. L. M., Koenen, R. R., Kutmon, M., & Cosemans, J. M. E. M. (2022). Finding the "switch" in platelet activation: prediction of key mediators involved in reversal of platelet activation using a novel network biology approach. Journal of Proteomics, 261, Article 104577. https://doi.org/10.1016/j.jprot.2022.104577
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  • Balech, B., Coort, S., Dede Sener, D., Evelo, C., & Bouwman, J. (2022). The future of food and nutrition in ELIXIR. F1000Research, 11, Article 978. https://doi.org/10.12688/f1000research.51747.1
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  • Day, K., Dordevic, A. L., Truby, H., Southey, M. C., Coort, S., & Murgia, C. (2021). Transcriptomic changes in peripheral blood mononuclear cells with weight loss: systematic literature review and primary data synthesis. Genes and nutrition, 16(1), Article 12. https://doi.org/10.1186/s12263-021-00692-6
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  • Ostaszewski, M., Niarakis, A., Mazein, A., Kuperstein, I., Phair, R., Orta-Resendiz, A., Singh, V., Aghamiri, S. S., Acencio, M. L., Glaab, E., Ruepp, A., Fobo, G., Montrone, C., Brauner, B., Frishman, G., Monraz Gómez, L. C., Somers, J., Hoch, M., Kumar Gupta, S., ... COVID-19 Disease Map Community (2021). COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology, 17(10), Article e10387. https://doi.org/10.15252/msb.202110387
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  • Hanspers, K., Kutmon, M., Coort, S. L., Digles, D., Dupuis, L. J., Ehrhart, F., Hu, F. T., Lopes, E. N., Martens, M., Pham, N., Shin, W., Slenter, D. N., Waagmeester, A., Willighagen, E. L., Winckers, L. A., Evelo, C. T., & Pico, A. R. (2021). Ten simple rules for creating reusable pathway models for computational analysis and visualization. PLoS Computational Biology, 17(8), Article e1009226. https://doi.org/10.1371/journal.pcbi.1009226
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  • Garcia, A. M., Bishop, E. L., Li, D. Y., Jeffery, L. E., Garten, A., Thakker, A., Certo, M., Mauro, C., Tennant, D. A., Dimeloe, S., Evelo, C. T., Coort, S. L., & Hewison, M. (2021). Tolerogenic effects of 1,25-dihydroxyvitamin D on dendritic cells involve induction of fatty acid synthesis. Journal of Steroid Biochemistry and Molecular Biology, 211, Article 105891. https://doi.org/10.1016/j.jsbmb.2021.105891
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  • Dordevic, A. L., Coort, S. L., Evelo, C. T., Murgia, C., Sinclair, A. J., Bonham, M. P., Larsen, A. E., Gran, P., & Cameron-Smith, D. (2021). Blunted nutrient-response pathways in adipose tissue following high fat meals in men with metabolic syndrome: A randomized postprandial transcriptomic study. Clinical Nutrition, 40(3), 1355-1366. https://doi.org/10.1016/j.clnu.2020.08.024
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https://scholar.google.nl/citations?user=XyHJkkMAAAAJ&hl=en