Dr. Anjusha Mathew uses mass spectrometry and cryo-EM to transform our understanding of complex protein structures
In 2018, Anjusha Mathew moved from India to Maastricht to begin her PhD. Seven years later, she is an assistant professor at the M4i research institute, part of the Faculty of Health, Medicine and Life Sciences. Recently, she was thrilled to receive a major grant for her research, in which she links mass spectrometry with cryo-electron microscopy – something that could change our understanding of complex protein structures. “Thanks to this grant, I can take the next step in my research.”
Mathew was interested in science from a young age. “Maths and physics were my favourite subjects in high school,” she says. “I started with a bachelor’s degree in Applied Electronics and Instrumentation at the College of Engineering Trivandrum in India. There, I developed a passion for instrumentation, the field focused on designing and building measuring equipments and systems. Wanting to apply my skills to scientific and applied research, I pursued a master’s degree in Earth System Sciences at the Indian Institute of Space Science and Technology, where I applied my instrumentation expertise to space science.”
After that, she started looking for an interesting PhD position. “I found it at Maastricht University. I moved into the field of biomolecular mass spectrometry (MS) instrumentation, gaining the opportunity to design, develop, and optimise complex, large-scale MS-based instruments in biological context.”
Differences between India and the Netherlands
Her new job meant swapping India for Maastricht. “It was quite a change, because the Dutch and Indian cultures are completely different,” she says with a laugh. “The Dutch are very independent, and there is more gender equality here. I also noticed that the Dutch are very direct. In the workplace, I appreciate that clarity. What do I miss most about India? The wide variety of festivals and the food. But fortunately I can still enjoy a little bit of my culture through Indian festival celebrations organised locally in different regions of Europe and by eating in Indian restaurants.”
Important research
Mathew finished her PhD in May 2023. She then did her post-doctoral research at M4i, and in January 2024 was offered a tenure-track appointment as a principal investigator and assistant professor. Within 11 months she got a permanent position. Together with her team, she conducts research on analytical instrumentation and methodologies to visualise the structure of MMAs. “These are large molecular structures, such as protein complexes and viruses,” she explains. “They’re involved in transmitting signals between cells or transporting substances inside them. To understand how our bodies function, and how diseases like Alzheimer’s or cancer develop, it’s important to know what MMAs look like down to the finest detail.”

To this end, Mathew combines mass spectrometry and cryogenic electron microscopy (cryo-EM). “In cryo-EM, first we freeze the MMA sample very rapidly at extremely low temperatures, so it keeps its original shape. Then the cryo-EM produces razor-sharp images using an electron beam instead of light. This gives us an incredibly detailed picture of the structure of MMAs. Cryo-EM is a powerful technique, but it also presents challenges – for example in sample preparation, data collection, and data processing. The electron beams can cause damage to the samples. And the microscope itself has limits in terms of resolution, or the sharpness of the images.”
Mathew and her team want to improve this by using image-guided native mass spectrometry (nMS) to prepare the samples before applying cryo-EM. “We guide the MMAs in their native state through vacuum in a mass spectrometer onto a surface – in this case, the cryo-EM sample grid – where they are collected for analysis. The molecules can break or deform in the process. We’re trying to give them a ‘soft landing,’ so they stay intact. This alternative approach could mitigate the reduced sample heterogeneity by leveraging the ultrahigh resolution mass separation and selection capabilities of the mass spectrometer, while maintaining the higher-order molecular structure of MMAs throughout the process, and can provide ultra-pure samples for cryo-EM. Because of this the cryo-EM can produce better and more reliable images. I received a grant through the National Technology Strategy to pursue this. I’m very excited, because it means we can now start developing a ‘soft landing unit.’ We hope to complete it within five years, and then refine it further. This will allow us to create better images of MMA structures and deepen our understanding of health and disease.”
“I’m very excited, because it means we can now start developing a ‘soft landing unit.’ We hope to complete it within five years, and then refine it further. This will allow us to create better images of MMA structures and deepen our understanding of health and disease.”
Dr Anjusha MathewMarried life
Every year, Mathew spends a month in India with her family. This year’s trip was especially memorable: she got married during her visit. “We had a wonderful few weeks,” she says, beaming. “That’s why it was harder than usual to come back to the Netherlands this time. I really miss my husband, my family and my in-laws. Fortunately, we video call every day – that helps. My work also keeps me busy. But I can’t wait for my husband to finish his PhD in India and join me here. Then we can start building our life together in the Netherlands. I’m really looking forward to that.”
Text: Martina Langeveld
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