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Dr Ir C.T.A. Evelo

Research profile
  • Bioinformatics;
  • Gene expression;
  • Combine transcriptomics, proteomics and metabolomics studies with epigenomics, ChIP and SNP data and sequence and network analysis;
  • Systems Biology.
Recent publications
  • Ozisik, O., Kara, N. S., Abbassi-Daloii, T., Térézol, M., Kuijper, E. C., Queralt-Rosinach, N., Jacobsen, A., Sezerman, O. U., Roos, M., Evelo, C. T., Baudot, A., Ehrhart, F., & Mina, E. (2025). A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease. Scientific Reports, 15(1), Article 1412. https://doi.org/10.1038/s41598-025-85580-4
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  • Wijnbergen, D., Johari, M., Ozisik, O., 't Hoen, P. A. C., Ehrhart, F., Baudot, A., Evelo, C. T., Udd, B., Roos, M., & Mina, E. (2025). Multi-omics analysis in inclusion body myositis identifies mir-16 responsible for HLA overexpression. Orphanet Journal of Rare Diseases, 20(1), Article 27. https://doi.org/10.1186/s13023-024-03526-x
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  • Domínguez-Romero, E., Mazurenko, S., Scheringer, M., Martins Dos Santos, V. A. P., Evelo, C. T., Anton, M., Hancock, J. M., Županic, A., & Suarez-Diez, M. (2025). Response to Letter to Editor by A. Derbalah et al: the role of automation in enhancing reproducibility and interoperability of PBPK models. Briefings in bioinformatics, 26(1), Article bbaf060. https://doi.org/10.1093/bib/bbaf060
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  • Kienhuis, A., Krul, C., van Engelen, J., Evelo, C. T., Hessel, E., Hoekman, J., Kramer, N., Krop, E., Masereeuw, R., Moors, E., Negro, S. O., Piersma, A. H., Pieters, R., Teunis, M., Willighagen, E., & Legler, J. (2025). The Virtual Human Platform for Safety Assessment (VHP4Safety) project: Next generation chemical safety assessment based on human data. ALTEX, 42(1), 111-120. https://doi.org/10.14573/altex.2407211
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  • Dominguez-Romero, E., Mazurenko, S., Scheringer, M., dos Santos, V. A. P. M., Evelo, C. T., Anton, M., Hancock, J. M., Zupanic, A., & Suarez-Diez, M. (2024). Making PBPK models more reproducible in practice. Briefings in Bioinformatics, 25(6), Article bbae569. https://doi.org/10.1093/bib/bbae569
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  • Bahram Sangani, N., Koetsier, J., Mélius, J., Kutmon, M., Ehrhart, F., Evelo, C. T., Curfs, L. M. G., Reutelingsperger, C. P., & Eijssen, L. M. T. (2024). A novel insight into neurological disorders through HDAC6 protein-protein interactions. Scientific Reports, 14(1), Article 14666. https://doi.org/10.1038/s41598-024-65094-1
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  • Ammar, A., Evelo, C., & Willighagen, E. (2024). FAIR assessment of nanosafety data reusability with community standards. Scientific data, 11(1), Article 503. https://doi.org/10.1038/s41597-024-03324-x
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  • Bernabé, C. H., Thielemans, L., Kaliyaperumal, R., Carta, C., Zhang, S., van Gelder, C. W. G., Benis, N., Santos, L. B. D. S., Cornet, R., dos Santos Vieira, B., Lalout , N., Henriques, I., Cámara Ballesteros, A., Burger, K., Kersloot, M. G., Ehrhart, F., Van Enckevort, E., Evelo, C., Gray, A., ... Jacobsen, A. (2024). Building expertise on FAIR through evolving Bring Your Own Data (BYOD) workshops: describing the data, software, and managementfocused approaches and their evolution. (pp. 429-456). Data Intelligence. https://doi.org/10.1162/dint_a_00236
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  • Slenter, D., Kutmon, M., Evelo, C. T., & Willighagen, E. L. (2024). Discovering life's directed metabolic (sub)paths to interpret human biochemical markers using the DSMN tool. Digital Discovery, 3(1), 81-98. https://doi.org/10.1039/d3dd00069a
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  • Agrawal, A., Balci, H., Hanspers, K., Coort, S. L., Martens, M., Slenter, D. N., Ehrhart, F., Digles, D., Waagmeester, A., Wassink, I., Abbassi-Daloii, T., Lopes, E. N., Iyer, A., Acosta, J. M., Willighagen, L. G., Nishida, K., Riutta, A., Basaric, H., Evelo, C. T., ... Pico, A. R. (2024). WikiPathways 2024: next generation pathway database. Nucleic acids research, 52(D1), D679–D689. https://doi.org/10.1093/nar/gkad960
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Publications

Publications Department of Bioinformatics

https://www.researchgate.net/profile/Chris_Evelo