Dr Ir C.T.A. Evelo

Iyer, A., Doornbos, C., Evelo, C., Kutmon, M., & Ehrhart, F. (2026). GSEA and the coexpression network approach identify novel pathway connections of molecular processes affected in Porto-sinusoidal vascular disease. PLOS ONE, 21(5), Article e0347338. https://doi.org/10.1371/journal.pone.0347338

Houweling, J. M., Arras, M. M. L., Willighagen, E. L., Jennen, D. G. J., Evelo, C. T., & Kienhuis, A. S. (2026). ToxTempAssistant: : using large language models to standardise cell-based toxicological test method descriptions. Evidence-Based Toxicology, 4(1). Advance online publication. https://doi.org/10.1080/2833373X.2026.2638036

Ehrhart, F., Martens, H., Rosenblum, N. D., Schedl, A., Schlesinger, T. A., Gjerstad, A. C., Haffner, D., Ho, J., Evelo, C. T., Woolf, A. S., Weber, R. G., & Schaefer, F. (2026). Molecular pathways of kidney development and their applications to clinical research. Kidney International, 109(2), 287-296. https://doi.org/10.1016/j.kint.2025.09.032

Ozisik, O., Kara, N. S., Abbassi-Daloii, T., Térézol, M., Kuijper, E. C., Queralt-Rosinach, N., Jacobsen, A., Sezerman, O. U., Roos, M., Evelo, C. T., Baudot, A., Ehrhart, F., & Mina, E. (2025). A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease. Scientific Reports, 15(1), Article 1412. https://doi.org/10.1038/s41598-025-85580-4

Wijnbergen, D., Johari, M., Ozisik, O., 't Hoen, P. A. C., Ehrhart, F., Baudot, A., Evelo, C. T., Udd, B., Roos, M., & Mina, E. (2025). Multi-omics analysis in inclusion body myositis identifies mir-16 responsible for HLA overexpression. Orphanet Journal of Rare Diseases, 20(1), Article 27. https://doi.org/10.1186/s13023-024-03526-x

Domínguez-Romero, E., Mazurenko, S., Scheringer, M., Martins Dos Santos, V. A. P., Evelo, C. T., Anton, M., Hancock, J. M., Županic, A., & Suarez-Diez, M. (2025). Response to Letter to Editor by A. Derbalah et al: the role of automation in enhancing reproducibility and interoperability of PBPK models. Briefings in bioinformatics, 26(1), Article bbaf060. https://doi.org/10.1093/bib/bbaf060

Fiaz, H., Khan, A. R., Ehrhart, F., Hussain, M., Evelo, C. T. A., Awan, F. R., & Coort, S. L. M. (2025). Investigating the role of Vitamin D and its targeted gene-pathway interactions involved in cardiometabolic health. International Journal of Health Sciences, 19(3), 29-42. https://doi.org/10.25259/OA04_8774

Kienhuis, A., Krul, C., van Engelen, J., Evelo, C. T., Hessel, E., Hoekman, J., Kramer, N., Krop, E., Masereeuw, R., Moors, E., Negro, S. O., Piersma, A. H., Pieters, R., Teunis, M., Willighagen, E., & Legler, J. (2025). The Virtual Human Platform for Safety Assessment (VHP4Safety) project: Next generation chemical safety assessment based on human data. ALTEX, 42(1), 111-120. https://doi.org/10.14573/altex.2407211

Dominguez-Romero, E., Mazurenko, S., Scheringer, M., dos Santos, V. A. P. M., Evelo, C. T., Anton, M., Hancock, J. M., Zupanic, A., & Suarez-Diez, M. (2024). Making PBPK models more reproducible in practice. Briefings in Bioinformatics, 25(6), Article bbae569. https://doi.org/10.1093/bib/bbae569

Bahram Sangani, N., Koetsier, J., Mélius, J., Kutmon, M., Ehrhart, F., Evelo, C. T., Curfs, L. M. G., Reutelingsperger, C. P., & Eijssen, L. M. T. (2024). A novel insight into neurological disorders through HDAC6 protein-protein interactions. Scientific Reports, 14(1), Article 14666. https://doi.org/10.1038/s41598-024-65094-1