Former members

Former PhD candidates

• Upcoming PhD defence: drs. Denise Slenter; Thesis: Symphonies of Metabolomics: Utilizing graphs as sheet music to orchestrate biochemical interactions relevant in health and disease.
• Dr. Marvin Martens; Thesis: Adverse outcome pathways coming to life: exploring new ways to support risk assessments. doi: 10.26481/dis.20240129mm
• Dr. Andra Waagmeester; Thesis: Biological Pathway Abstractions: From Two-Dimensional Drawings to Multidimensional Linked Data. doi: 10.26481/dis.20240116aw
• Dr. Ryan Miller; Thesis: Pathway connections: connectivity of pathway elements and their directions in biological molecular pathway diagrams. doi: 10.26481/dis.20221206rm
• Dr. Amadeo Munoz Garcia; Thesis: Immunometabolic effects of vitamin D unravelled by an integrative systems biology analysis: A collaborative bioinformatics and laboratory approach. doi: 10.26481/dis.20200825ag
• Dr. Elisa Cirillo; Thesis: Genetic variations in connection: understanding the effects of Single Nucleotide Polymorphisms in their biological context. doi: 10.26481/dis.20190118ec
• Dr. Anwesha Bohler; Thesis: Towards the complete picture: combining modelling and experimental data in a systems biology approach. doi: 10.26481/dis.20170216abd
• Dr. Martina Kutmon; Thesis: Managing biological data in pathways and networks. doi: 10.26481/dis.20150122mk
• Dr. Michiel Adriaens; Thesis: Understanding regulation of gene transcription through epigenomics and cistromics : unfolding ones and zeros into (un)folding chromatin. Link 
• Dr. Thomas Kelder; Thesis: Exploratory pathway analysis. Link
• Dr. Martijn van Iersel; Thesis: Data integration with biological pathways. Link