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K. Knoops

Recente publicaties
  • Fois, M. G., Birgani, Z. N. T., Lopez-Iglesias, C., Knoops, K., van Blitterswijk, C., Giselbrecht, S., Habibovic, P., & Truckenmuller, R. K. (2024). In vitro vascularization of 3D cell aggregates in microwells with integrated vascular beds. Materials today. Bio, 29, Article 101260. https://doi.org/10.1016/j.mtbio.2024.101260
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  • Beumer, J., Geurts, M. H., Geurts, V., Andersson-Rolf, A., Akkerman, N., Völlmy, F., Krueger, D., Busslinger, G. A., Martínez-Silgado, A., Boot, C., Yousef Yengej, F. A., Puschhof, J., Van de Wetering, W. J., Knoops, K., López-Iglesias, C., Peters, P. J., Vivié, J. A., Mooijman, D., van Es, J. H., & Clevers, H. (2024). Description and functional validation of human enteroendocrine cell sensors. Science, 386(6719), 341-348. https://doi.org/10.1126/science.adl1460
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  • Debeuf, M.-E. P. H., Knoops, K., Lopez-Iglesias, C., Lookermans, E., Nelemans, P. J., Abdul Hamid, M., van Geel, M., Gostynski, A. H., Steijlen, P. M., Bolling, M. C., & Verstraeten, V. L. R. M. (2024). Long-term remission of Hailey-Hailey disease by Er: YAG ablative laser therapy. Journal of the European Academy of Dermatology and Venereology. Advance online publication. https://doi.org/10.1111/jdv.20351
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  • You, W., Knoops, K., Berendschot, T. T. J. M., Benedikter, B. J., Webers, C. A. B., Reutelingsperger, C. P. M., & Gorgels, T. G. M. F. (2024). PGC-1a mediated mitochondrial biogenesis promotes recovery and survival of neuronal cells from cellular degeneration. Cell Death Discovery, 10(1), Article 180. https://doi.org/10.1038/s41420-024-01953-0
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  • van Gorp, C., de Lange, I. H., Hutten, M. C., Lopez-Iglesias, C., Massy, K. R. I., Kessels, L., Knoops, K., Cuijpers, I., Sthijns, M. M. J. P. E., Troost, F. J., van Gemert, W. G., Spiller, O. B., Birchenough, G. M. H., Zimmermann, L. J. I., & Wolfs, T. G. A. M. (2024). Antenatal Ureaplasma Infection Causes Colonic Mucus Barrier Defects: Implications for Intestinal Pathologies. International Journal of Molecular Sciences, 25(7), Article 4000. https://doi.org/10.3390/ijms25074000
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  • You, W., Knoops, K., Boesten, I., Berendschot, T. T. J. M., van Zandvoort, M. A. M. J., Benedikter, B. J., Webers, C. A. B., Reutelingsperger, C. P. M., & Gorgels, T. G. M. F. (2024). A time window for rescuing dying retinal ganglion cells. Cell Communication and Signaling, 22(1), Article 88. https://doi.org/10.1186/s12964-023-01427-3
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  • Vermeulen, S., Knoops, K., Duimel, H., Parvizifard, M., van Beurden, D., López-Iglesias, C., Giselbrecht, S., Truckenmüller, R., Habibovic, P., & Tahmasebi Birgani, Z. (2023). An in vitro model system based on calcium- and phosphate ion-induced hMSC spheroid mineralization. Materials today. Bio, 23(1), Article 100844. https://doi.org/10.1016/j.mtbio.2023.100844
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  • Klabunde, B., Wesener, A., Bertrams, W., Beinborn, I., Paczia, N., Surmann, K., Blankenburg, S., Wilhelm, J., Serrania, J., Knoops, K., Elsayed, E. M., Laakmann, K., Jung, A. L., Kirschbaum, A., Hammerschmidt, S., Alshaar, B., Gisch, N., Abu Mraheil, M., Becker, A., ... Schmeck, B. (2023). NAD+ metabolism is a key modulator of bacterial respiratory epithelial infections. Nature Communications, 14(1), Article 5818. https://doi.org/10.1038/s41467-023-41372-w
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  • You, W., Zhou, T., Knoops, K., Berendschot, T. T. J. M., van Zandvoort, M. A. M. J., Germeraad, W. T. V., Benedikter, B., Webers, C. A. B., Reutelingsperger, C. P. M., & Gorgels, T. G. M. F. (2023). Stressed neuronal cells can recover from profound membrane blebbing, nuclear condensation and mitochondrial fragmentation, but not from cytochrome c release. Scientific Reports, 13(1), Article 11045. https://doi.org/10.1038/s41598-023-38210-w
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  • Baptista, D., Birgani, Z. T., Widowski, H., Passanha, F., Stylianidis, V., Knoops, K., Gubbins, E., Iriondo, C., Skarp, K. P., Rottier, R. J., Wolfs, T. G., van Blitterswijk, C., LaPointe, V., Habibovic, P., Reynaert, N. L., Giselbrecht, S., & Truckenmuller, R. (2023). Polymer film-based microwell array platform for long-term culture and research of human bronchial organoids. Materials today. Bio, 19(1), Article 100603. https://doi.org/10.1016/j.mtbio.2023.100603
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Overige publicaties

1. Liu, X., Gallay, C., Kjos, M., Domenech, A., Slager, J., van Kessel, S.P., Knoops, K., Sorg, R.A., Zhang, J.R. & Veening, J.W. (2017) High-throughput CRISPRi phenotyping identifies new essential genes in Streptococcus pneumoniae. Mol Syst Biol. 10;13(5):931.
2. Botte, M., Zaccai, N.R., Nijeholt, J.L., Martin, R., Knoops, K., Papai, G., Zou, J., Deniaud, A., Karuppasamy, M., Jiang, Q., Roy, A.S., Schulten, K., Schultz, P., Rappsilber, J., Zaccai, G., Berger, I., Collinson, I. & Schaffitzel, C. (2016) A central cavity within the holo-translocon suggests a mechanism for membrane protein insertion. Sci Rep. 7;6:38399.
3. Schmidt, A., Kochanowski, K., Vedelaar, S., Ahrné, E., Volkmer, B., Callipo, L., Knoops, K., Bauer, M., Aebersold, R. & Heinemann, M. (2016) The quantitative and condition-dependent Escherichia coli proteome. Nat Biotechnol. 34(1):104-10.
4. Jakobi, A.J., Passon, D.M., Knoops, K., Stellato, F., Liang, M., White, T.A., Seine, T., Messerschmidt, M., Chapman, H.N. & Wilmanns, M. (2016) In cellulo serial crystallography of alcohol oxidase crystals inside yeast cells. IUCrJ. 12;3(Pt 2):88-95.
5.  Knoops, K., de Boer, R., Kram, A.M. & van der Klei, I. (2015) Yeast pex1 cells contain peroxisomal ghosts that import matrix proteins upon reintroduction of Pex1. J Cell Biol. 211(5):955-62.
6. Williams, C., Opalinski, L., Landgraf, C., Costello, J., Schrader, M., Krikken, A.M., Knoops, K, Kram, A.M., Volkmer, R. & van der Klei, I.J. (2015) The membrane remodeling protein Pex11p activates the GTPase Dnm1p during peroxisomal fission. Proc Natl Acad Sci U S A. 112(20):6377-82.
7. Knoops, K., Manivannan, S., Cepińska, M.N., Krikken, A.M., Kram, A.M., Veenhuis, M. & van der Klei, I.J. (2014) Preperoxisomal vesicles can form in the absence of Pex3. J Cell Biol. 204(5):659-668.
8. von Loeffelholz, O., Knoops, K., Ariosa, A., Zhang, X., Karuppasamy, M., Huard, K., Schoehn, G., Berger, I., Shan, S.O. & Schaffitzel, C. (2013) Structural basis of signal sequence surveillance and selection by the SRP-FtsY complex. Nat Struct Mol Biol. 20(5):604-10.
9. Knoops, K., Schoehn, G. & Schaffitzel, C. (2012) Cryo-electron microscopy of ribosomal complexes in co-translational folding, targeting and translocation. Wiley Interdiscip Rev RNA. 3(3):429-41.
10. Lunin, V.Y., Lunina, N.L., Casutt, M.S., Knoops, K., Schaffitzel, C., Steuber, J., Fritz, G. & Baumstark, M.W. (2012) Low-resolution structure determination of Na+-translocating NADH:ubiquinone oxidoreductase from Vibrio cholerae by ab initio phasing and electron microscopy. Acta Cryst D. 68(Pt6):724-31.
11. Knoops, K., Bárcena, M., Limpens, R.W.A.L., Koster, A.J., Mommaas, A.M. & Snijder, E.J. (2012) Ultrastructural characterization of arterivirus replication structures: Reshaping the endoplasmic reticulum to accommodate viral RNA synthesis. J Virol. 86(5):2474-87.
12. van den Worm, S.H., Knoops, K., Zevenhoven-Dobbe, J.C., Beugeling, C., van der Meer, Y., Mommaas, A.M. & Snijder, E.J. (2011) Development and RNA-synthesizing activity of coronavirus replication structures in the absence of protein synthesis. J Virol. 85(11):5669-73.
13. Knoops, K., Swett-Tapia, C., van den Worm, S.H., Te Velthuis, A.J., Koster, A.J., Mommaas, A.M., Snijder, E.J. & Kikkert, M. (2010) Integrity of the early secretory pathway promotes, but is not required for, severe acute respiratory syndrome coronavirus RNA synthesis and virus-induced remodeling of endoplasmic reticulum membranes. J Virol. 84(2):833-46.
14. van Hemert, M.J., van den Worm, S.H., Knoops, K., Mommaas, A.M., Gorbalenya, A.E. & Snijder, E.J. (2008) SARS-coronavirus replication/transcription complexes are membrane-protected and need a host factor for activity in vitro. PLoS Pathog. 2;4(5):e1000054.
15. van Driel, L.F., Knoops, K., Koster, A.J. & Valentijn, J.A. (2008) Fluorescent labeling of resin-embedded sections for correlative electron microscopy using tomography-based contrast enhancement. J Struct Biol. 161(3):372-83.
16. Knoops, K., Kikkert, M., Worm, S.H., Zevenhoven-Dobbe, J.C., van der Meer, Y., Koster, A.J., Mommaas, A.M. & Snijder, E.J. (2008) SARS-coronavirus replication is supported by a reticulovesicular network of modified endoplasmic reticulum. PLoS Biol. 16;6(9):e226.
17. van den Born, E., Posthuma, C.C., Knoops, K. & Snijder, E.J. (2007) An infectious recombinant equine arteritis virus expressing green fluorescent protein from its replicase gene. J Gen Virol. 88(Pt4):1196-205.
18. Almsherqi, Z.A., McLachlan, C.S., Mossop, P., Knoops, K. & Deng, Y. (2005) Direct template matching reveals a host subcellular membrane gyroid cubic structure that is associated with SARS virus. Redox Rep. 10(3):167-71.
19. Komduur, J.A., Bellu, A.R., Knoops, K., van der Klei, I.J. & Veenhuis, M. (2004) Cold-inducible selective degradation of peroxisomes in Hansenula polymorpha. FEMS Yeast Res. 5(3):281-5.