A. Ammar

Jeliazkova, N., Longhin, E., El yamani, N., Rundén-Pran, E., Moschini, E., Serchi, T., Vrček, I. V., Burgum, M. J., Doak, S. H., Cimpan, M. R., Rios-Mondragon, I., Cimpan, E., Battistelli, C. L., Bossa, C., Tsekovska, R., Drobne, D., Novak, S., Repar, N., Ammar, A., ... Dusinska, M. (2024). A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials. Nature Protocols, 19(9), 2642-2684. https://doi.org/10.1038/s41596-024-00993-1

Ammar, A., Evelo, C., & Willighagen, E. (2024). FAIR assessment of nanosafety data reusability with community standards. Scientific data, 11(1), Article 503. https://doi.org/10.1038/s41597-024-03324-x

van Rijn, J. P. M., Martens, M., Ammar, A., Cimpan, M. R., Fessard, V., Hoet, P., Jeliazkova, N., Murugadoss, S., Vinkovic Vrcek, I., & Willighagen, E. L. (2024). From papers to RDF-based integration of physicochemical data and adverse outcome pathways for nanomaterials. Journal of Cheminformatics, 16(1), Article 49. https://doi.org/10.1186/s13321-024-00833-0

Abbassi-Daloii, T., Gadiya, Y., Ammar, A., Willighagen, E., Sima, A. C., & Balci, H. (2024). BioDataFuse: Enhancing Data Interoperability through Modular Queries and Knowledge Graph Construction. CEUR Workshop Proceedings, 3890, 161-164. Article 205624. https://ceur-ws.org/Vol-3890/paper-23.pdf

Hosseini beghaeiraveri, S. A., Labra gayo, J. E., Waagmeester, A., Ammar, A., Gonzalez, C., Slenter, D., Ul-Hasan, S., Willighagen, E., Mcneill, F., Gray, A. J. G., Kaffee, L.-A. (Ed.), Razniewski, S. (Ed.), & Vougiouklis, P. (Ed.) (2024). Wikidata subsetting: Approaches, tools, and evaluation. Semantic web, 15(6), 2209-2235. https://doi.org/10.3233/SW-233491

Maier, D., Exner, T. E., Papadiamantis, A. G., Ammar, A., Tsoumanis, A., Doganis, P., Rouse, I., Slater, L. T., Gkoutos, G. V., Jeliazkova, N., Ilgenfritz, H., Ziegler, M., Gerhard, B., Kopetsky, S., Joshi, D., Walker, L., Svendsen, C., Sarimveis, H., Lobaskin, V., ... Lynch, I. (2023). Harmonising knowledge for safer materials via the "NanoCommons" Knowledge Base. Frontiers in Physics, 11, Article 1271842. https://doi.org/10.3389/fphy.2023.1271842

Dumit, V. I., Ammar, A., Bakker, M. I., Bañares, M. A., Bossa, C., Costa, A., Cowie, H., Drobne, D., Exner, T. E., Farcal, L., Friedrichs, S., Furxhi, I., Grafström, R., Haase, A., Himly, M., Jeliazkova, N., Lynch, I., Maier, D., Noorlander, C. W., ... Nymark, P. (2023). From principles to reality. FAIR implementation in the nanosafety community. Nano Today, 51(1), Article 101923. https://doi.org/10.1016/j.nantod.2023.101923

Furxhi, I., Willighagen, E., Evelo, C., Costa, A., Gardini, D., & Ammar, A. (2023). A data reusability assessment in the nanosafety domain based on the NSDRA framework followed by an exploratory quantitative structure activity relationships (QSAR) modeling targeting cellular viability. NanoImpact, 31(1), Article 100475. https://doi.org/10.1016/j.impact.2023.100475

Ammar, A., Cavill, R., Evelo, C., & Willighagen, E. (2023). PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity. Journal of Cheminformatics, 15(1), Article 31. https://doi.org/10.1186/s13321-023-00701-3