Wohlgemuth, G., Mehta, S. S., Mejia, R. F., Neumann, S., Pedrosa, D., Pluskal, T., ... Fiehn, O. (2016). SPLASH, a hashed identifier for mass spectra. Nature Biotechnology, 34(11), 1099-1101. DOI: 10.1038/nbt.3689

Kutmon, M., Riutta, A., Nunes, N., Hanspers, K., Willighagen, E. L., Bohler, A., ... Pico, A. R. (2016). WikiPathways: capturing the full diversity of pathway knowledge. Nucleic Acids Research, 44(D1), D488-D494. DOI: 10.1093/nar/gkv1024

Hastings, J., Jeliazkova, N., Owen, G., Tsiliki, G., Munteanu, C. R., Steinbeck, C., & Willighagen, E. (2015). eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment. Journal of biomedical semantics, 6, [10]. DOI: 10.1186/s13326-015-0005-5

Fu, G., Batchelor, C., Dumontier, M., Hastings, J., Willighagen, E., & Bolton, E. (2015). PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. Journal of Cheminformatics, 7, 34. DOI: 10.1186/s13321-015-0084-4

Mietchen, D., Hagedorn, G., Willighagen, E., Rico, M., Gómez-Pérez, A., Aibar, E., ... Kinzler, D. (2015). Enabling open science: Wikidata for research (Wiki4R). Research Ideas and Outcomes, 1, [e7573]. DOI: 10.3897/rio.1.e7573

Willighagen, E. L., Waagmeester, A. S., Spjuth, O., Ansell, P., Williams, A. J., Tkachenko, V., ... Wild, D. J. (2013). The ChEMBL database as linked open data. Journal of Cheminformatics, 5(1), [23]. DOI: 10.1186/1758-2946-5-23

Kohonen, P., Benfenati, E., Bower, D., Ceder, R., Crump, M., Cross, K., ... Hardy, B. (2013). The ToxBank Data Warehouse: Supporting the Replacement of In Vivo Repeated Dose Systemic Toxicity Testing. Molecular Informatics, 32(1), 47-63. DOI: 10.1002/minf.201200114

Spjuth, O., Rydberg, P., Willighagen, E. L., Evelo, C. T., & Jeliazkova, N. (2016). XMetDB: an open access database for xenobiotic metabolism. Journal of Cheminformatics, 8, [47]. DOI: 10.1186/s13321-016-0161-3

Martens, M., Verbruggen, T., Nymark, P., Grafstrom, R., Burgoon, L. D., Aladjov, H., ... Willighagen, E. L. (2018). Introducing WikiPathways as a Data-Source to Support Adverse Outcome Pathways for Regulatory Risk Assessment of Chemicals and Nanomaterials. Frontiers in Genetics, 9, [661]. DOI: 10.3389/fgene.2018.00661

Townend, G. S., Ehrhart, F., van Kranen, H. J., Wilkinson, M., Jacobsen, A., Roos, M., ... Curfs, L. M. G. (2018). MECP2 variation in Rett syndrome-An overview of current coverage of genetic and phenotype data within existing databases. Human Mutation, 39(7), 914-924. DOI: 10.1002/humu.23542

Nymark, P., Rieswijk, L., Ehrhart, F., Jeliazkova, N., Tsiliki, G., Sarimveis, H., ... Grafstrom, R. C. (2018). A Data Fusion Pipeline for Generating and Enriching Adverse Outcome Pathway Descriptions. Toxicological Sciences, 162(1), 264-275. DOI: 10.1093/toxsci/kfx252

Slenter, D. N., Kutmon, M., Hanspers, K., Riutta, A., Windsor, J., Nunes, N., ... Willighagen, E. L. (2018). WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. Nucleic Acids Research, 46(D1), D661-D667. DOI: 10.1093/nar/gkx1064

Karcher, S., Willighagen, E. L., Rumble, J., Ehrhart, F., Evelo, C. T., Fritts, M., ... Hendren, C. O. (2018). Integration among databases and data sets to support productive nanotechnology: Challenges and recommendations. NanoImpact, 9, 85-101. DOI: 10.1016/j.impact.2017.11.002

Guha, R., & Willighagen, E. (2017). Helping to improve the practice of cheminformatics. Journal of Cheminformatics, 9, [40]. DOI: 10.1186/s13321-017-0217-z

Nielsen, F. Å., Mietchen, D., & Willighagen, E. (2017). Scholia, Scientometrics and Wikidata. In The Semantic Web: ESWC 2017 Satellite Events (1 ed., Vol. 10577, pp. 237-259). (The Semantic Web: ESWC 2017 Satellite Events; Vol. 10577). Springer International Publishing. DOI: 10.1007/978-3-319-70407-4_36

Leist, M., Ghallab, A., Graepel, R., Marchan, R., Hassan, R., Bennekou, S. H., ... Hengstler, J. G. (2017). Adverse outcome pathways: opportunities, limitations and open questions. Archives of Toxicology, 91(11), 3477-3505. DOI: 10.1007/s00204-017-2045-3

Van Rijswijk, M., Beirnaert, C., Caron, C., Cascante, M., Dominguez, V., Dunn, W. B., ... Steinbeck, C. (2017). The future of metabolomics in ELIXIR. F1000Research, 6, [1649]. DOI: 10.12688/f1000research.12342.2

Kuhn, T., Willighagen, E., Evelo, C., Queralt-rosinach, N., Centeno, E., & Furlong, L. I. (2017). Reliable Granular References to Changing Linked Data. In The Semantic Web – ISWC 2017: 16th International Semantic Web Conference, Vienna, Austria, October 21–25, 2017, Proceedings, Part I (1 ed., Vol. 10587, pp. 436-451). (The Semantic Web – ISWC 2017; Vol. 10587). Springer International Publishing. DOI: 10.1007/978-3-319-68288-4_26